我知道过去在这个论坛(
1,
2,
3)已经提出了这个问题.在将此标记为重复之前,我尝试了所有答案但没有成功.大多数问题很久以前就被提出过了,与pandoc相关的一些更新可能会影响现在的结果.

问题是我正在使用RMarkdown撰写科学论文,并希望以HTML,PDF或Word文件的形式导出结果.

更重要的是,有12位作者签署了这些文件.一些作者提出了多个联盟,一些作者提出了相同的联系.

我的问题非常明确：我如何编辑YAML以包含YAML中所有隶属关系的所有作者,以便导出为不同的格式(HTML,PDF,DOC)？

我试过这个YAML：

---
title: "My title"
author:
  - name: Mario Modesto-Mata^1,2^
    email: paleomariomm@gmail.com
  - name: Christopher^1^
  - name: Seaghán Mhartain^2^
  - name: Rita Yuri Ynoue^1^
address:
  - code: 1
    address: Instituto de Astronomía, Geofísica e Ciências Atmosféricas, Universidade de São Paulo
  - code: 2
    address: Faculdade de Medicina, Universidade de São Paulo
date: "1 October 2018"
output: 
  pdf_document: 
    number_sections: yes
    toc: yes
    toc_depth: 4
  word_document:
    toc: yes
  html_document:
    css: Scripts accesorios/estiloboton.css
    number_sections: yes
    theme: sandstone
    toc: yes
    toc_depth: 4
bibliography: references.bib
csl: science.csl
---

PDF输出

这是我在导出到PDF .Rmd文件时看到的内容：

而不是作者,我认为是真实的,没有隶属关系.

HTML输出

我看到作者而不是所有的联盟号码.从属关系本身仍然隐藏着.

DOCX输出

最终的Word文件中不会显示任何名称或附属关系.

我的系统

我正在使用最新的RStudio版本(版本1.1.453),在Linux Mint 19 Cinnamon上运行.

更新：原始示例

---
title: "My title"
author:
  - Mario Modesto-Mata:
      email: paleomariomm@gmail.com
      institute: [cenieh, ucl1, ppex]
      correspondence: true
  - M. Christopher Dean:
    institute: [ucl2, nhm]
  - Yuliet Quintino:
    institute: ubu
  - Rebeca García-González:
    institute: ubu
  - Rodrigo S. Lacruz:
    institute: nyu
  - Timothy G. Bromage:
    institute: nyu
  - Cecilia García-Campos:
    institute: [cenieh, ucl1]
  - Marina Martínez de Pinillos:
    institute: cenieh
  - Laura Martín-Francés:
    institute: [bor, cenieh]
  - María Martinón-Torres:
    institute: [cenieh, ucl1]
  - Eudald Carbonell:
    institute: [iphes, urv]
  - Juan Luis Arsuaga:
    institute: [isciii, ucm]
  - José María Bermúdez de Castro:
    institute: [cenieh, ucl1]
institute:
  - cenieh: Centro Nacional de Investigación sobre la Evolución Humana (CENIEH), Paseo Sierra de Atapuerca 3, 09002, Burgos, Spain
  - ucl1: Department of Anthropology, University College London, London, WC1H 0BW, UK
  - ucl2: Department of Cell and Developmental Biology, University College London, Gower Street, London, WC1E 6BT, UK
  - ubu: Laboratorio de Evolución Humana, Unierisdad de Burgos, Edificio I+D+i, Burgos, Spain
  - ppex: Equipo Primeros Pobladores de Extremadura, Casa de Cultura Rodríguez Moñino, Cáceres, Spain
  - nhm: Centre for Human Evolution Research (CHER), Department of Earth Sciences, Natural History Museum, London, SW7 5BD, UK
  - nyu: New York University
  - bor: De la Préhistoire à l'Actuel - Culture, Environnement et Anthropologie, University of Bordeaux, CNRS, MCC, PACE, UMR 5199 F_33615, Pessac Cedex, France
  - iphes: Institut Català de Paleoecologia Humana i Evolució Social (IPHES), Zona Educacional 4, Campus Sescelades, Edifici W3, Universitat Rovira i Virgili, Tarragona, Spain
  - urv: Àrea de Prehistòria, Universitat Rovira i Virgili, Avinguda de Catalunya 35, 43002, Tarragona, Spain
  - isciii: Centro mixto UCM-ISCIII de Evolución y Comportamiento humanos, Madrid, Spain
  - ucm: Departamento de Geodinámica, Estratigrafía y Paleontología, Facultad de Ciencias Geológicas, Universidad Complutense de Madrid, Spain
date: "1 October 2018"
output: 
  pdf_document: 
    number_sections: yes
    toc: yes
    toc_depth: 4
    pandoc_args:
      - '--lua-filter=scholarly-metadata.lua'
      - '--lua-filter=author-info-blocks.lua'
  html_document:
    css: Scripts accesorios/estiloboton.css
    number_sections: yes
    theme: sandstone
    toc: yes
    toc_depth: 4
  word_document:
    toc: yes
    pandoc_args:
      - '--lua-filter=scholarly-metadata.lua'
      - '--lua-filter=author-info-blocks.lua'
bibliography: references.bib
csl: science.csl
---

最佳答案 据我所知,目前还没有一个适合所有人的解决方案.

如果目标只是PDF,我建议使用RStudio的rticles.这很棒.

与docx一起使用的解决方案更加困难.一种可能性是使用pandoc Lua filters. repository collecting useful filters包含两个过滤器,可以帮助您：scholarly-metadata和author-info-blocks.(重要免责声明：我写了这些.)

将.lua文件放在目录中,稍微更改YAML结构,并指示pandoc运行过滤器：

---
title: "My title"
author:
  - Mario Modesto-Mata:
      email: paleomariomm@gmail.com
      institute: [astro, med]
      correspondence: true
  - name: Christopher
    institute: astro
  - name: Seaghán Mhartain
    institute: med
  - name: Rita Yuri Ynoue
    institute: astro
institute:
  - astro: Instituto de Astronomía, Geofísica e Ciências Atmosféricas, Universidade de São Paulo
  - med: Faculdade de Medicina, Universidade de São Paulo
date: "1 October 2018"
output: 
  word_document:
    toc: yes
    pandoc_args:
      - '--lua-filter=scholarly-metadata.lua'
      - '--lua-filter=author-info-blocks.lua'
  pdf_document: 
    number_sections: yes
    toc: yes
    toc_depth: 4
    pandoc_args:
      - '--lua-filter=scholarly-metadata.lua'
      - '--lua-filter=author-info-blocks.lua'
---

这将是PDF输出：

虽然这是Word中的样子：

联系和联系信息被添加到正文中,这就是toc显示在正文上方的原因.