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Example 1

def phase(self, mu, phi):
        """Non-scattering phase matrix.

            Returns : null phase matrix

        """
        npol = 2
        return np.zeroes((npol * len(mu), npol * len(mu))) 

Example 2

def batch_update(self, mini_batch, eta, n, regularization=L2):
		""" Update the network's weights and biases by applying gradient
		descent using backpropagation to a single mini batch. """
		nabla_b = [np.zeroes(b.shape) for b in self.biases]
		nabla_w = [np.zeros(w.shape) for w in self.weights]
		for x, y in mini_batch:
			delta_nabla_b, delta_nabla_w = self.back_propogation(x, y)
			nabla_b = [nb+dnb for nb, dnb in zip(nabla_b, delta_nabla_b)]
			nabla_w = [nw+dnw for nw, dnw in zip(nabla_w, delta_nabla_w)]
		self.biases = [b-(eta/len(mini_batch))*nb for b, nb in zip(self.biases, nabla_b)]
		if regularization == L2:
			self.weights = [(1-eta*(self.l2/n))*w-(eta/len(mini_batch))*nw for w, nw in zip(self.weights, nabla_w)]
		elif regularization == L1:
			self.weights = [w - eta*self.l1*np.sign(w)/n-(eta/len(mini_batch))*nw for w, nw in zip(self.weights, nabla_w)] 

Example 3

def _make_test_folds(self, X, y=None, labels=None):
        if self.shuffle:
            rng = check_random_state(self.random_state)
        else:
            rng = self.random_state
        y = np.asarray(y)
        n_samples = y.shape[0]
        unique_y, y_inversed = np.unique(y, return_inverse=True)
        y_counts = bincount(y_inversed)
        min_labels = np.min(y_counts)
        if np.all(self.n_folds > y_counts):
            raise ValueError("All the n_labels for individual classes"
                             " are less than %d folds."
                             % (self.n_folds))
        if self.n_folds > min_labels:
            warnings.warn(("The least populated class in y has only %d"
                           " members, which is too few. The minimum"
                           " number of labels for any class cannot"
                           " be less than n_folds=%d."
                           % (min_labels, self.n_folds)), Warning)

        # pre-assign each sample to a test fold index using individual KFold
        # splitting strategies for each class so as to respect the balance of
        # classes
        # NOTE: Passing the data corresponding to ith class say X[y==class_i]
        # will break when the data is not 100% stratifiable for all classes.
        # So we pass np.zeroes(max(c, n_folds)) as data to the KFold
        per_cls_cvs = [
            KFold(self.n_folds, shuffle=self.shuffle,
                  random_state=rng).split(np.zeros(max(count, self.n_folds)))
            for count in y_counts]

        test_folds = np.zeros(n_samples, dtype=np.int)
        for test_fold_indices, per_cls_splits in enumerate(zip(*per_cls_cvs)):
            for cls, (_, test_split) in zip(unique_y, per_cls_splits):
                cls_test_folds = test_folds[y == cls]
                # the test split can be too big because we used
                # KFold(...).split(X[:max(c, n_folds)]) when data is not 100%
                # stratifiable for all the classes
                # (we use a warning instead of raising an exception)
                # If this is the case, let's trim it:
                test_split = test_split[test_split < len(cls_test_folds)]
                cls_test_folds[test_split] = test_fold_indices
                test_folds[y == cls] = cls_test_folds

        return test_folds